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Ensembl · By jaechang-hits

9 skills found.
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Skills

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1
1.Gget Genomic Databases

Unified CLI/Python interface to 20+ genomic databases. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3742 repos~5.3kAutomated safety check: PassBSD-2-Clause12 days ago
2
2.Gene Database

NCBI Gene via E-utilities: curated records across 1M+ taxa. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3741 repo~4.4kAutomated safety check: PassCC0-1.012 days ago
3
3.Mouse Phenome Database

Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API.

jaechang-hits/SciAgent-Skills3741 repo~6.8kAutomated safety check: PassCC-BY-4.012 days ago
4
4.Ucsc Genome Browser

Query UCSC Genome Browser REST API for DNA sequences, tracks, gene models, and conservation across 100+ assemblies.

jaechang-hits/SciAgent-Skills3741 repo~6kAutomated safety check: PassApache-2.012 days ago
5
5.Bioservices Multi Database

Unified Python interface to 40+ bioinformatics web services: UniProt proteins, KEGG pathways, ChEMBL/ChEBI/PubChem, BLAST, cross-database ID mapping, GO annotations, PPI.

jaechang-hits/SciAgent-Skills3741 repo~6.1kAutomated safety check: PassUnknown12 days ago
6
6.Clinvar Database

Query NCBI ClinVar via E-utilities for variant clinical significance, pathogenicity, disease associations.

jaechang-hits/SciAgent-Skills3741 repo~4.9kAutomated safety check: PassCC0-1.012 days ago
7
7.Ensembl Database

Ensembl REST API for gene/transcript/variant annotations in 300+ species.

jaechang-hits/SciAgent-Skills3741 repo~4kAutomated safety check: PassApache-2.012 days ago
8
8.Uniprot Protein Database

Query UniProt REST API: search by gene/protein name, fetch FASTA, map IDs (Ensembl, PDB, RefSeq), access Swiss-Prot annotations.

jaechang-hits/SciAgent-Skills3741 repo~3.4kAutomated safety check: PassCC-BY-4.012 days ago
9
9.Snpeff Variant Annotation

Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3741 repo~5.4kAutomated safety check: PassMIT12 days ago

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