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NCBI · By aipoch
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 2 | Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance… | aipoch/ | 1.9k | — | ~856 | Automated safety check: Pass | MIT | 24 days ago |
| 3 | ETE (Environment for Tree Exploration) toolkit for phylogenetic and hierarchical tree analysis; use it when you need to parse/manipulate Newick/NHX trees, detect duplication/speciation events… | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 4 | Query the NCBI Gene database via E-utilities and the NCBI Datasets API; use it when you need to search genes by symbol/ID and retrieve annotations (RefSeq, GO, location, phenotype) for single or… | aipoch/ | 1.9k | — | ~1.3k | Automated safety check: Pass | MIT | 24 days ago |
| 5 | Search for gene expression DataSets and Profiles in the NCBI GEO database. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 6 | 6.Gget Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or… | aipoch/ | 1.9k | — | ~816 | Automated safety check: Pass | MIT | 24 days ago |
| 7 | Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 8 | A comprehensive toolbox for computational molecular biology; use it when you need programmatic sequence/structure parsing, batch bioinformatics pipelines, or automated NCBI/BLAST workflows. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 9 | Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O, lightweight sequence… | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 10 | A skill for performing sequence alignment using NCBI BLAST API. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 11 | Generates academic reviews for molecules in diseases using PubMed research. | aipoch/ | 1.9k | — | ~1.8k | Automated safety check: Pass | MIT | 24 days ago |
| 12 | Use Bio.Entrez to access NCBI databases (e.g., PubMed/GenBank) for searching, fetching summaries, and downloading records when your workflow needs to call the NCBI E-utilities API over the network. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
