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By QING1105
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | End-to-end 10x Visium spatial transcriptomics analysis workflow with staged execution and human review gates. | QING1105/ | 101 | — | ~1.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Visium HD platform branch of the spatial transcriptomics workflow — reconstruct single cells from 2 μm bins via morphological segmentation and bin-to-cell aggregation. | QING1105/ | 101 | — | ~2.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Atera platform branch of the spatial transcriptomics workflow — load and validate Atera cell-level output (AnnData + Zarr segmentation) for downstream analysis. | QING1105/ | 101 | — | ~576 | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Stage 3 of the spatial transcriptomics workflow — identify spatial domains and detect spatially variable genes. | QING1105/ | 101 | — | ~476 | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Stage 4 of the spatial transcriptomics workflow — deconvolve Visium spots into cell-type proportions. | QING1105/ | 101 | — | ~480 | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Stage 5 of the spatial transcriptomics workflow — neighborhood enrichment and cell-cell communication analysis. | QING1105/ | 101 | — | ~513 | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Classic Visium platform branch of the spatial transcriptomics workflow — spot-level 5-stage pipeline (load+QC, normalize+cluster, domains+SVG, deconvolution, downstream prep). | QING1105/ | 101 | — | ~750 | Automated safety check: Pass | MIT | 1 mo ago |
| 8 | Xenium platform branch of the spatial transcriptomics workflow — load and validate the platform's cell-level matrix for downstream analysis. | QING1105/ | 101 | — | ~535 | Automated safety check: Pass | MIT | 1 mo ago |
| 9 | Stage 1 of the spatial transcriptomics workflow — load 10x Visium data and QC-filter low-quality spots. | QING1105/ | 101 | — | ~467 | Automated safety check: Pass | MIT | 1 mo ago |
| 10 | Stage 2 of the spatial transcriptomics workflow — normalize 10x Visium data and cluster spatial spots. | QING1105/ | 101 | — | ~428 | Automated safety check: Pass | MIT | 1 mo ago |
| 11 | Shared downstream analysis for all spatial platforms (Visium, Visium HD, Xenium, Atera) — neighborhood enrichment, CellChat cell-cell communication, and RNA velocity. | QING1105/ | 101 | — | ~737 | Automated safety check: Pass | MIT | 1 mo ago |
