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Matplotlib · By GPTomics
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Visualize copy number profiles, segments, allele-specific tracks, and cohort patterns from CNVkit, GATK, ASCAT, FACETS, Sequenza, and other callers. | GPTomics/ | 1.2k | 2 repos | ~3.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Select colormaps and qualitative palettes for scientific figures using perceptual-uniformity, color-vision-deficiency safety, and luminance-monotonicity criteria. | GPTomics/ | 1.2k | 2 repos | ~3.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Build Manhattan, Miami, QQ, and locuszoom-style regional plots from GWAS, TWAS, PWAS, and QTL summary statistics with correct genomic-inflation diagnostics, multi-trait overlays, lead-SNP labeling… | GPTomics/ | 1.2k | 2 repos | ~4.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Build publication-quality figures with matplotlib using the object-oriented Figure/Axes API, constrainedlayout, rcParams customization, TrueType (Type-42) font embedding for journal submission, and… | GPTomics/ | 1.2k | 2 repos | ~2.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Compose multi-panel publication figures with patchwork, cowplot, gridExtra (R), or matplotlib GridSpec/subfigures (Python) including shared axes/legends/guides collection, panel labels in… | GPTomics/ | 1.2k | 2 repos | ~3k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Visualize biological networks (PPI, gene-regulatory, co-expression, pathway) with layout algorithm choice (ForceAtlas2, Fruchterman-Reingold, Kamada-Kawai, hive plots), edge bundling… | GPTomics/ | 1.2k | 2 repos | ~3.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Build volcano and MA plots from differential-expression / association results with LFC shrinkage, FDR-adjusted thresholds, sensible label placement, and axis-truncation conventions. | GPTomics/ | 1.2k | 2 repos | ~5.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 8 | Renders Hi-C contact matrices honestly and reproducibly with matplotlib, cooltools, HiCExplorer, pyGenomeTracks, FAN-C, CoolBox, and plotgardener. | GPTomics/ | 1.2k | 1 repo | ~5.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 9 | Draw and export phylogenetic trees with Bio.Phylo plus matplotlib, and route rich figures to ggtree, ETE4, or iTOL. | GPTomics/ | 1.2k | 1 repo | ~5.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 10 | Exports publication-ready figures with the correct vector/raster split, embedded editable fonts, color-space-robust palettes, and journal-correct sizing and resolution in matplotlib and ggplot2. | GPTomics/ | 1.2k | 1 repo | ~3.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 11 | Build restriction maps showing enzyme cut positions and inter-site distances along DNA using Biopython Bio.Restriction. | GPTomics/ | 1.2k | 1 repo | ~2.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 12 | Draws TCR/BCR repertoire figures - V-J chord/circos, CDR3 spectratype, clonal-space stratification, clonal tracking across timepoints, rarefaction/extrapolation curves, overlap heatmaps, and… | GPTomics/ | 1.2k | 1 repo | ~3.9k | Automated safety check: Pass | MIT | 1 mo ago |
