Research & Science · Python · For developers

Researches a GitHub repository over four rounds using the GitHub API and web search, then writes a structured markdown report with timeline, metrics and Mermaid diagrams.

bytedance/deer-flow

A skill your agent uses when a user has cloned PaperGraph MCP and asks to install, initialize, configure, set up, or start using it with an agent or MCP client.

lotchuazzz-crypto/papergraph-mcp

Enter "plan mode" for a deep-research or article-writing task — search the web, fetch sources, optionally run experiments in Python/Node, design one recommended outline and research strategy, then…

MagicCube/helixent

Audits, scaffolds and safely migrates research project folder structures, keeping existing repositories read-only until you approve exact moves from a plan.

Light0305/Light-skills

Explains how to run, integrate and debug the deep-research-mcp project through its CLI, Python API or MCP server, with OpenAI, Gemini and DR-Tulu backends.

pminervini/deep-research-mcp

Run AlphaGenome-PyTorch to get genomic track predictions — via the agt predict CLI (single locus, BED regions, whole chromosomes, raw FASTA sequences, or per-gene count tables/AnnData), variant…

genomicsxai/alphagenome-pytorch

Author, package, validate, or run mathematical evaluations as Jacobian Harbor datasets.

morluto/jacobian

Snapshot the computational environment for a replication package — detects the analysis stack (R / Stata / Python) and emits the right lockfiles (renv.lock + sessionInfo.txt, requirements.txt /…

pedrohcgs/claude-code-my-workflow

Extract reusable Jacobian capabilities from a mathematical solution corpus, rather than one agent trajectory.

morluto/jacobian

Packages standalone FHIR R4 resources from OpenMed output into one transaction Bundle with stable fullUrls and rewritten references, ready to post to a FHIR server.

maziyarpanahi/openmed

Root-cause a failing or wrong empirical result with a disciplined reproduce → minimise → hypothesise → instrument → fix loop, instead of guessing-and-poking.

pedrohcgs/claude-code-my-workflow

Identifies super-enhancers from H3K27ac, MED1, or BRD4 ChIP-seq using ROSE, ROSE2, LILY, HOMER -style super, and ENCODE dELS cross-referencing.

GPTomics/bioSkills

A skill your agent uses when a skill fails for a missing tool or the environment needs checking.

Aperivue/medsci-skills

Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML.

GPTomics/bioSkills

Use Jacobian’s typed operations when exact computation or structural analysis can help solve a mathematical problem.

morluto/jacobian

A skill your agent uses when the user wants to generate or edit images with Google's Nanobanana/Gemini image models using the official Gemini API shape, or when they need publication-style…

LeoYeAI/openclaw-master-skills

Dense, machine-readable API reference for PyFixest — high-dimensional fixed-effects OLS/WLS/IV and Poisson (feols, fepois, feglm), clustered/robust standard errors, R-style formula syntax, and…

brycewang-stanford/Auto-Empirical-Research-Skills

Programmatic access to the PubChem database (via PUG-REST API and PubChemPy) for searching chemical compounds, retrieving physicochemical properties, performing structure similarity/substructure…

aipoch/medical-research-skills

Query gnomAD for population allele frequencies to assess variant rarity.

FreedomIntelligence/OpenClaw-Medical-Skills

Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills

经济金融研究端到端完整流程。从研究想法到可投稿论文，覆盖文献综述、想法生成、新颖性验证、实证方法设计、论文大纲、正文写作、图表生成、LaTeX编译和投稿前检查。

csmar432/finai-research