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Research & Science · Jupyter
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | A skill your agent uses when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels… | xuzhougeng/ | 1k | — | ~3.7k | Automated safety check: Pass | AGPL-3.0 | yesterday |
| 2 | Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports. | FreedomIntelligence/ | 3.1k | 2 repos | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Guide Claude through SCSA, MetaTiME, CellVote, CellMatch, GPTAnno, and weighted KNN transfer workflows for annotating single-cell modalities. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 4 | Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in… | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 5 | Walk through omicverse's single-cell preprocessing tutorials to QC PBMC3k data, normalise counts, detect HVGs, and run PCA/embedding pipelines on CPU, CPU–GPU mixed, or GPU stacks. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq… | FreedomIntelligence/ | 3.1k | 1 repo | ~3.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 7 | Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 8 | Verifies required tools (Quarto, uv, Python, R, Stata, TeX) and Jupyter kernels are installed. | brycewang-stanford/ | 4.6k | — | ~578 | Automated safety check: Notes | Unknown | 6 days ago |
| 9 | Creates a Jupyter notebook with Jupytext pairing and registers it in quarto.yml. | brycewang-stanford/ | 4.6k | — | ~361 | Automated safety check: Notes | Unknown | 6 days ago |
