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Research & Science · Google Cloud · GPTomics/bioSkills
3 skills found.
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Download raw sequencing reads from NCBI SRA using sra-tools (prefetch, fasterq-dump, vdb-validate) or the ENA mirror. | GPTomics/ | 1.2k | 2 repos | ~4k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Estimates bivariate genetic correlation (rg) between traits from GWAS summary statistics or individual-level genotypes using cross-trait LDSC, HDL, LAVA, rho-HESS, GREML-bivariate, Popcorn, and HDL-L. | GPTomics/ | 1.2k | 2 repos | ~9.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Queries gnomAD v4 (807k samples), v3, v2.1.1, and constraint metrics with grpmax FAF95, bottleneck-group exclusion, LOEUF interpretation, SV/CNV/mtDNA catalogs, and Whiffin max-credible-AF framework. | GPTomics/ | 1.2k | 2 repos | ~6.2k | Automated safety check: Pass | MIT | 1 mo ago |
