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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 2161 | Simulate SimBiology models — ODE, stochastic (SSA), scenarios, and sensitivity analysis. | matlab/ | 1.1k | — | ~3.8k | Automated safety check: Pass | Unknown | 3 days ago |
| 2162 | 2162.Paper Summarizer Agents should invoke this skill for academic or technical papers, arXiv/PubMed/IEEE/ACM links, PDFs, methodology review, limitations, practical implications, or extracting findings for engineering… | waybarrios/ | 534 | — | ~951 | Automated safety check: Pass | MIT | 5 days ago |
| 2163 | 2163.Alphaxiv Quick single-paper lookup via AlphaXiv LLM-optimized summaries with tiered source fallback. | AI4Scientist/ | 128 | 2 repos | ~2k | Automated safety check: Notes | No licence | 4 mo ago |
| 2164 | 2164.Deepxiv Search and progressively read open-access academic papers through DeepXiv. | AI4Scientist/ | 128 | 2 repos | ~1.6k | Automated safety check: Notes | No licence | 4 mo ago |
| 2165 | 2165.Exa Search AI-powered web search via Exa with content extraction. An agent skill from AI4Scientist/nano-scientist. | AI4Scientist/ | 128 | 2 repos | ~1.8k | Automated safety check: Notes | No licence | 4 mo ago |
| 2166 | 2166.Gemini Search Search research papers via Gemini for broad literature discovery. | AI4Scientist/ | 128 | 2 repos | ~2.2k | Automated safety check: Notes | No licence | 4 mo ago |
| 2167 | 2167.Kill Argument Two-thread adversarial review: a fresh reviewer constructs the strongest 200-word rejection memo, then a second fresh reviewer defends the paper point-by-point and surfaces still-unresolved critical… | AI4Scientist/ | 128 | 2 repos | ~5.1k | Automated safety check: Notes | No licence | 4 mo ago |
| 2168 | 2168.Openalex Search academic papers via OpenAlex API for open citation data, institutional affiliations, and funding information. | AI4Scientist/ | 128 | 2 repos | ~2.1k | Automated safety check: Notes | No licence | 4 mo ago |
| 2169 | 2169.Research Review Get a deep critical review of research from Claude via claude-review MCP. | AI4Scientist/ | 128 | 2 repos | ~1.3k | Automated safety check: Pass | No licence | 4 mo ago |
| 2170 | 2170.Source Verification Verify sources, claims, images, video, documents, interviews, and synthetic media with SIFT and a durable evidence trail. | jamditis/ | 416 | — | ~1.4k | Automated safety check: Pass | MIT | 7 days ago |
| 2171 | Research-method workflow guide for hypothesis framing, peer-review style critique, reproducibility planning, study-design checks, and scientific-writing structure. | DrugClaw/ | 126 | — | ~712 | Automated safety check: Pass | Apache-2.0 | 6 mo ago |
| 2172 | 2172.Bulkrna Read Qc Load when checking raw FASTQ quality (Phred / GC / adapter / Q20-Q30) before alignment in bulk RNA-seq. | TianGzlab/ | 161 | — | ~1.1k | Automated safety check: Pass | Apache-2.0 | 4 days ago |
| 2173 | 2173.Ulw Research [omh] Deep dive before a decision: deep research engine - grounding for specs and decisions: study open-source reference implementations with pinned refs, gather live web evidence with citation… | rlaope/ | 3.2k | — | ~4.2k | Automated safety check: Pass | MIT | yesterday |
| 2174 | 2174.Kb Answer Answer questions using your project's knowledge base with evidence-backed citations. | techwolf-ai/ | 132 | — | ~1.5k | Automated safety check: Pass | MIT | 12 days ago |
| 2175 | 2175.Research Research: structured investigation, fact-checking, explanation traces. | notque/ | 441 | — | ~1.7k | Automated safety check: Notes | MIT | 2 days ago |
| 2176 | 2176.Audit Evidence Audit numeric, artifact, log, citation, and cross-report claims against inspectable evidence. | NeuroAIHub/ | 1.1k | — | ~474 | Automated safety check: Pass | AGPL-3.0 | 9 days ago |
| 2177 | Research a bounded factual, documentation, API, or literature question from authoritative sources and save a self-contained Markdown report with claim-level citations. | NeuroAIHub/ | 1.1k | — | ~503 | Automated safety check: Pass | AGPL-3.0 | 9 days ago |
| 2178 | Generates submission-ready Elsevier/SCI Highlights from manuscript text or extracted PDF/DOCX/TXT content. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 2179 | Design and simulate adaptive clinical trials with interim analyses, decision rules, and operating-characteristic summaries; use when planning adaptive designs or comparing stopping, enrichment, or… | aipoch/ | 1.9k | — | ~3k | Automated safety check: Pass | MIT | 24 days ago |
| 2180 | 2180.Alphafold DB Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession. | aipoch/ | 1.9k | — | ~606 | Automated safety check: Pass | MIT | 24 days ago |
| 2181 | 2181.Arboreto Infer gene regulatory networks (GRNs) from gene expression matrices using GRNBoost2 or GENIE3; use when analyzing bulk or single-cell RNA-seq to identify TF→target regulatory relationships. | aipoch/ | 1.9k | — | ~802 | Automated safety check: Pass | MIT | 24 days ago |
| 2182 | 2182.Arxiv Database Search and retrieve scientific preprints from arXiv; use it when you need to find papers by keyword/author/category, fetch metadata (abstract, DOI, PDF URL), or download PDFs for offline reading. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 2183 | A skill your agent uses when determining author order on research manuscripts, assigning CRediT contributor roles for transparency, documenting individual contributions to collaborative projects, or… | aipoch/ | 1.9k | — | ~2.9k | Automated safety check: Pass | MIT | 24 days ago |
| 2184 | Generate structured SOAP notes from clinical narratives, transcripts, or existing notes; use when the user needs de-identified clinical documentation organized into Subjective, Objective… | aipoch/ | 1.9k | — | ~4.3k | Automated safety check: Pass | MIT | 24 days ago |
| 2185 | A skill your agent uses when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after… | aipoch/ | 1.9k | — | ~2.8k | Automated safety check: Pass | MIT | 24 days ago |
| 2186 | 2186.Biodbnet API Access bioDBnet REST services for biological identifier conversion, pathway retrieval, and ortholog mapping. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 2187 | 2187.Biogrid Orcs Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 2188 | Builds professional search strategies for PubMed, Embase, Web of Science, and similar databases. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 2189 | 2189.Biorxiv Database Search, retrieve metadata, and download PDFs for bioRxiv preprints; use when you need to discover biology preprints by keywords/authors/date ranges and programmatically fetch their details. | aipoch/ | 1.9k | — | ~1.4k | Automated safety check: Pass | MIT | 24 days ago |
| 2190 | 2190.Bioservices Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single workflow, especially… | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 2191 | 2191.Brenda Database Programmatic access to the BRENDA enzyme database via the SOAP API; use when you need kinetic constants (Km, kcat, Vmax), reaction equations, enzyme properties (pH/temperature optima, stability), or… | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Notes | MIT | 24 days ago |
| 2192 | 2192.Cerna Analysis A skill your agent uses when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF… | aipoch/ | 1.9k | — | ~2.4k | Automated safety check: Pass | MIT | 24 days ago |
| 2193 | 2193.Chembl Database Query the ChEMBL database for bioactive molecules, targets, bioactivities, and approved drugs; use this when you need to filter by physicochemical properties (e.g., MW, LogP), chemical structure… | aipoch/ | 1.9k | — | ~1.3k | Automated safety check: Pass | MIT | 24 days ago |
| 2194 | A skill your agent uses when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix… | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 2195 | 2195.Citation Management Comprehensive citation management for academic research; use when you need to discover papers (Google Scholar/PubMed), extract/verify metadata (DOI/PMID/arXiv/URL), and produce validated, clean… | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 2196 | 2196.Citation Network Build and visualize a citation network from a source/target CSV to identify key papers, communities, and emerging hotspots; use when you have citation pairs and need fast literature review or trend… | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 2197 | Batch extracts and verifies structured information (PMID, title, abstract, methodology, results, etc.) from clinical research literature using PMIDs. | aipoch/ | 1.9k | — | ~1.2k | Automated safety check: Pass | MIT | 24 days ago |
| 2198 | 2198.Clinvar Database Utilities for querying the NCBI ClinVar database to retrieve variant records, clinical significance, and phenotype relationships; use when searching variants by gene/condition/significance… | aipoch/ | 1.9k | — | ~856 | Automated safety check: Pass | MIT | 24 days ago |
| 2199 | Adapt scientific abstracts to conference-specific word limits, section rules, and formatting constraints; use when reshaping an existing abstract for submission. | aipoch/ | 1.9k | — | ~2.2k | Automated safety check: Pass | MIT | 24 days ago |
| 2200 | A skill your agent uses when identifying stable sample subtypes from bulk expression matrices with ConsensusClusterPlus, including PAC-based model selection and consensus matrix/CDF visualization. | aipoch/ | 1.9k | — | ~2k | Automated safety check: Pass | MIT | 24 days ago |
| 2201 | 2201.Ctd API Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 2202 | A skill your agent uses when screening differentially expressed genes from a bulk expression matrix between two user-specified groups, producing DEG tables, a volcano plot, and a clustered heatmap. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 2203 | Analyzes clinical diagnostic accuracy studies for bias using the QUADAS-2 tool. | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 2204 | Diffusion-based molecular docking to predict 3D ligand–protein binding poses (blind docking) with confidence scoring; use when you need pose prediction for drug discovery or virtual screening. | aipoch/ | 1.9k | — | ~776 | Automated safety check: Pass | MIT | 24 days ago |
| 2205 | A skill your agent uses when analyzing bulk RNA-seq or microarray expression data to identify differentially expressed genes between two biological groups (case vs control), with volcano plots and… | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 2206 | A skill your agent uses when drafting patient discharge summaries, creating personalized discharge instructions, simulating post-discharge outcomes, reducing hospital readmissions, or optimizing… | aipoch/ | 1.9k | — | ~3.1k | Automated safety check: Pass | MIT | 24 days ago |
| 2207 | Generate hospital discharge summaries from admission data, hospital course, diagnoses, procedures, and follow-up plans; use when a structured discharge document is required from clinical notes. | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 24 days ago |
| 2208 | 2208.Discussion Composer Composes a Discussion around key findings, mechanisms, clinical relevance, and limitations. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
