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Research & Science · NCBI · By jaechang-hits
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Programmatic PubMed access via NCBI E-utilities REST API. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.4k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 2 | NCBI GEO access via GEOparse and E-utilities. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 2 repos | ~4.3k | Automated safety check: Pass | MIT | 12 days ago |
| 3 | NCBI Gene via E-utilities: curated records across 1M+ taxa. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.4k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 4 | Auto-annotate plasmids with features (promoters, terminators, resistance, origins, tags, fluorescent proteins) via BLAST against curated DBs (Addgene, fpbase, SnapGene). | jaechang-hits/ | 374 | 1 repo | ~4.7k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
| 5 | Molecular biology toolkit: sequence manipulation, FASTA/GenBank/PDB I/O, NCBI Entrez, BLAST automation, pairwise/MSA alignment, Bio.PDB, phylogenetic trees. | jaechang-hits/ | 374 | 1 repo | ~6k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 6 | Biopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic… | jaechang-hits/ | 374 | 1 repo | ~8.5k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 7 | Query NCBI ClinVar via E-utilities for variant clinical significance, pathogenicity, disease associations. | jaechang-hits/ | 374 | 1 repo | ~4.9k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 8 | KEGG REST API (academic only). An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.6k | Automated safety check: Pass | Unknown | 12 days ago |
| 9 | Annotate bacterial and archaeal genomes and plasmids with Bakta's Prodigal/HMM/diamond pipeline. | jaechang-hits/ | 374 | 1 repo | ~5.9k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
| 10 | Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API. | jaechang-hits/ | 374 | 1 repo | ~7.3k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 11 | 11.Ena Database ENA REST API for sequences, reads, assemblies, and annotations. | jaechang-hits/ | 374 | 1 repo | ~5.3k | Automated safety check: Pass | Unknown | 12 days ago |
| 12 | Annotate prokaryotic genomes (bacteria, archaea, viruses) via Prokka's BLAST/HMM pipeline. | jaechang-hits/ | 374 | 1 repo | ~6.1k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
