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Research & Science · Nextflow · By bactopia
5 skills found.
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Scaffold a complete Bactopia Tool across all three tiers -- module, subworkflow, and workflow entry point under workflows/bactopia-tools/. | bactopia/ | 522 | — | ~4.1k | Automated safety check: Pass | MIT | 2 mo ago |
| 2 | Propagate the Bactopia and nf-bactopia versions declared in versions.yml into the hand-maintained files that carry a literal version (conf/testbase.config, CITATION.cff, bin/bactopia… | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 3 | Regenerate nextflow.config and nextflowschema.json for Bactopia workflows by running bactopia-merge-schemas. | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 4 | Review citation integrity across data/citations.yml and @citation tags using bactopia-citations --validate. | bactopia/ | 522 | — | ~2.5k | Automated safety check: Pass | MIT | 2 mo ago |
| 5 | Review staleness of reference docs under .agents/docs/ using bactopia-docs --validate. | bactopia/ | 522 | — | ~3.4k | Automated safety check: Pass | MIT | 2 mo ago |
