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Research & Science · UMAP · By TianGzlab
3 skills found.
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Load when integrating multi-sample scRNA-seq with Harmony, scVI, scANVI, BBKNN, Scanorama, SIMBA, or supported R-backed methods to remove batch effects. | TianGzlab/ | 161 | — | ~2.1k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 2 | Load when building the neighbour graph, embedding (UMAP/t-SNE/diffmap/PHATE), and clustering (Leiden/Louvain) on a normalised single-cell AnnData. | TianGzlab/ | 161 | — | ~2.4k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 3 | Load when preprocessing a single-cell ATAC peak × cell AnnData via Signac-style TF-IDF + LSI + Leiden, producing a clustered UMAP-ready object. | TianGzlab/ | 161 | — | ~1.9k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
