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Product & Project Management · GPTomics/bioSkills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | ATAC-seq library quality control -- TSS enrichment, FRiP, fragment-size periodicity, library complexity (NRF/PBC1/PBC2), mitochondrial fraction, and ENCODE 4 thresholds. | GPTomics/ | 1.2k | 2 repos | ~5k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | End-to-end post-GWAS causal inference pipeline orchestrating heritability partitioning, genetic correlation, Mendelian randomization with CHP-aware sensitivity (CAUSE / LHC-MR), colocalization… | GPTomics/ | 1.2k | 2 repos | ~5.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Maps GWAS-implicated loci to candidate effector (causal) genes by integrating variant-to-gene (V2G) features via Open Targets L2G (Mountjoy 2021), MAGMA gene-based association (de Leeuw 2015), FUMA… | GPTomics/ | 1.2k | 2 repos | ~10k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Estimates SNP heritability and partitions it across functional annotations, cell types, and loci from GWAS summary statistics or individual-level genotypes. | GPTomics/ | 1.2k | 2 repos | ~8.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Implements multiplicity control for confirmatory clinical trials using graphical procedures (Bretz-Maurer-Hommel), gatekeeping (parallel, serial, mixed), Hochberg/Hommel/Holm with PRDS, and the… | GPTomics/ | 1.2k | 2 repos | ~6.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | Prioritizes rare-disease variants from trio/quad WES/WGS with de novo (DeNovoGear, Triodenovo), compound-heterozygous phasing (WhatsHap), mosaic VAF tiering, phenotype-driven ranking (Exomiser… | GPTomics/ | 1.2k | 2 repos | ~6.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 7 | Rank and prioritize neoantigen/epitope candidates by likely T-cell response using NeoFox feature annotation, PRIME2.0, BigMHC-IM, the Łuksza/Balachandran fitness model (agretopicity + foreignness)… | GPTomics/ | 1.2k | 1 repo | ~3.6k | Automated safety check: Pass | MIT | 1 mo ago |
