Data & Analytics · K-Dense-AI/scientific-agent-skills

Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface.

K-Dense-AI/scientific-agent-skills

Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive checks, diagnostics, and PSIS-LOO model…

K-Dense-AI/scientific-agent-skills

Supports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Severity Assessment) score and ARIMA-based foRcast…

K-Dense-AI/scientific-agent-skills

Creates and audits truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly.

K-Dense-AI/scientific-agent-skills

Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3.

K-Dense-AI/scientific-agent-skills

Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

K-Dense-AI/scientific-agent-skills

Supports geospatial research workflows for remote sensing, vector and raster GIS, spatial statistics, terrain and network analysis, and machine learning for Earth observation.

K-Dense-AI/scientific-agent-skills

Builds and audits reproducible NeuroKit2 research workflows for physiological time-series preprocessing, event/interval analysis, multimodal alignment, variability, and complexity.

K-Dense-AI/scientific-agent-skills

Performs Particle Image Velocimetry (PIV) analysis with OpenPIV.

K-Dense-AI/scientific-agent-skills

Explain and audit machine-learning predictions with SHAP. An agent skill from K-Dense-AI/scientific-agent-skills.

K-Dense-AI/scientific-agent-skills

Writes scientific Markdown documentation and Mermaid diagrams for workflows, relationships, timelines, and schemas.

K-Dense-AI/scientific-agent-skills

Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes.

K-Dense-AI/scientific-agent-skills

Scales pandas, NumPy, and custom Python research workflows beyond memory or across clusters with Dask.

K-Dense-AI/scientific-agent-skills

Guidance and local audit tools for Python workflows that directly use GeoPandas GeoSeries, GeoDataFrame, spatial operations, or vector-data I/O.

K-Dense-AI/scientific-agent-skills

Creates and customizes scientific plots with Matplotlib. An agent skill from K-Dense-AI/scientific-agent-skills.

K-Dense-AI/scientific-agent-skills

GPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster.

K-Dense-AI/scientific-agent-skills

Performs genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF, BAM, CRAM, GFF, GTF, FASTA and FASTQ data.

K-Dense-AI/scientific-agent-skills

Supports machine learning in Python with scikit-learn. An agent skill from K-Dense-AI/scientific-agent-skills.

K-Dense-AI/scientific-agent-skills

Builds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model selection, probability prediction, and…

K-Dense-AI/scientific-agent-skills

Calculates sample sizes and statistical power for study planning.

K-Dense-AI/scientific-agent-skills

Performs zero-shot time-series forecasting with Google's TimesFM, including regular-grid CSV preparation, quantile forecasts, XReg covariates, and held-out evaluation.

K-Dense-AI/scientific-agent-skills

Queries the U.S. An agent skill from K-Dense-AI/scientific-agent-skills.

K-Dense-AI/scientific-agent-skills

Processes large tabular scientific datasets with Vaex expressions, filtered views, streamed statistics, binned visualizations, and file conversion.

K-Dense-AI/scientific-agent-skills

Generates scientific diagram drafts using Nano Banana 2 AI with smart iterative refinement.

K-Dense-AI/scientific-agent-skills

Performs constraint-based metabolic modeling with COBRApy, including FBA, pFBA, FVA, gene knockouts, flux sampling, growth media, production envelopes, gap filling, and SBML model validation for…

K-Dense-AI/scientific-agent-skills

High-performance DataFrame library for Python ETL, analytics, and pandas migration.

K-Dense-AI/scientific-agent-skills

Creates Seaborn statistical visualizations with pandas integration for distributions, relationships, categorical comparisons, regression displays, pair plots, and heatmaps.

K-Dense-AI/scientific-agent-skills

Fits and diagnoses Python statistical models including OLS, GLM, discrete and mixed models, ARIMA and SARIMAX.

K-Dense-AI/scientific-agent-skills