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Data & Analytics · GPTomics/bioSkills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 97 | Scans genomes for natural selection with SFS tests (Tajima's D, Fay & Wu H, Zeng E, SweepFinder2 CLR), haplotype tests (iHS, nSL, XP-EHH, Rsb, H12), and differentiation (FST, PBS) using… | GPTomics/ | 1.2k | 1 repo | ~5.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 98 | Tests for differentially abundant proteins between conditions with limma/DEqMS empirical-Bayes moderation, proDA/msqrob2/MSstats missingness modeling, and Python Welch+BH alternatives. | GPTomics/ | 1.2k | 1 repo | ~5.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 99 | Quality control for bottom-up proteomics across three levels -- instrument/raw-signal (mass accuracy, RT/iRT fit, FWHM, TIC vs injection time, % MS2 identified), identification/run (missed… | GPTomics/ | 1.2k | 1 repo | ~6.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 100 | Orchestrates the full path from differential expression results to redundancy-collapsed functional enrichment: choose ORA vs GSEA, convert gene IDs per method, run… | GPTomics/ | 1.2k | 1 repo | ~5.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 101 | End-to-end bulk time-course analysis from an expression matrix to temporal gene modules and per-cluster pathway enrichment. | GPTomics/ | 1.2k | 1 repo | ~6k | Automated safety check: Pass | MIT | 1 mo ago |
| 102 | Builds publication-ready tables - descriptive Table 1, regression and differential-expression result tables, and supplementary tables - with gtsummary, gt, flextable, and kableExtra (R) or… | GPTomics/ | 1.2k | 1 repo | ~2.8k | Automated safety check: Pass | MIT | 1 mo ago |
