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Backend & APIs · jaechang-hits/SciAgent-Skills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Query ReMap 2022 TF ChIP-seq peak database via REST API and BED downloads. | jaechang-hits/ | 374 | 2 repos | ~7.2k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 2 | Query STRING REST API for PPIs (59M proteins, 20B interactions, 5000+ species). | jaechang-hits/ | 374 | 1 repo | ~4.2k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 3 | JASPAR 2024 TF binding profiles via REST API and pyJASPAR. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~7.1k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 4 | Monarch Initiative knowledge graph REST API for disease-gene-phenotype associations and cross-species orthology. | jaechang-hits/ | 374 | 1 repo | ~6.6k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 5 | Retrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. | jaechang-hits/ | 374 | 1 repo | ~6.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 6 | Query EBI QuickGO REST API for GO terms and protein annotations. | jaechang-hits/ | 374 | 1 repo | ~6.9k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 7 | Query RegulomeDB v2 GET REST API to score variants for regulatory function and retrieve overlapping evidence (TF binding, histone marks, DNase peaks, footprints, motifs, eQTLs, chromatin state). | jaechang-hits/ | 374 | 1 repo | ~5.3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 8 | Query COSMIC for cancer somatic mutations, gene census, mutational signatures, drug resistance variants. | jaechang-hits/ | 374 | 1 repo | ~4.6k | Automated safety check: Pass | CC-BY-NC-SA-4.0 | 12 days ago |
| 9 | Query openFDA REST API for adverse events (FAERS), labeling, product info, recalls, enforcement. | jaechang-hits/ | 374 | 1 repo | ~4.5k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 10 | NHGRI-EBI GWAS Catalog REST API for SNP-trait associations from published GWAS. | jaechang-hits/ | 374 | 1 repo | ~6.6k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 11 | KEGG REST API (academic only). An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.6k | Automated safety check: Pass | Unknown | 12 days ago |
| 12 | protocols.io REST API: search and fetch wet-lab, bioinformatics, and clinical protocols by keyword, DOI, or category, with steps, reagents, materials, equipment, timing. | jaechang-hits/ | 374 | 1 repo | ~4.3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 13 | Query the ClinPGx (formerly PharmGKB) REST API plus the CPIC PostgREST companion API for pharmacogenomic clinical annotations, CPIC/DPWG dosing guidelines, gene-drug pairs, variant-drug… | jaechang-hits/ | 374 | 1 repo | ~7.2k | Automated safety check: Pass | CC-BY-SA-4.0 | 12 days ago |
| 14 | Query FDA drug labels (DailyMed) via REST API. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~6k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 15 | Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API. | jaechang-hits/ | 374 | 1 repo | ~7.3k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 16 | Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). | jaechang-hits/ | 374 | 1 repo | ~7.3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 17 | Parse HMDB (Human Metabolome Database) local XML for metabolite info, chemical properties, biological context, disease links, spectra, and cross-DB mapping. | jaechang-hits/ | 374 | 1 repo | ~6.1k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 18 | Query InterPro REST API for protein domain architecture, family classification, and member-DB integration. | jaechang-hits/ | 374 | 1 repo | ~7.6k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 19 | Query Metabolomics Workbench REST API (4,200+ NIH studies) for metabolite ID, study discovery, RefMet standardization, m/z precursor searches, and gene/protein annotations. | jaechang-hits/ | 374 | 1 repo | ~5.3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 20 | Query Reactome pathways via REST: pathway queries, entity lookup, keyword search, gene list enrichment, hierarchy, cross-refs. | jaechang-hits/ | 374 | 1 repo | ~5.2k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 21 | Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
| 22 | Cross-reference compound IDs across 20+ databases (ChEMBL, DrugBank, PubChem, ChEBI, PDB, SureChEMBL, HMDB, DrugCentral, BindingDB) via UniChem REST API. | jaechang-hits/ | 374 | 1 repo | ~8.8k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 23 | Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download… | jaechang-hits/ | 374 | 1 repo | ~8.2k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
