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Backend & APIs · Ensembl · For developers
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Pull pre-computed ortholog calls from public databases (OrthoDB, Ensembl Compara, OMA browser, eggNOG, PANTHER, KEGG Orthology, HomoloGene) via their REST APIs. | GPTomics/ | 1.2k | 2 repos | ~4.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Tests gene lists, ranked vectors, and fold-change vectors against KEGG pathways and modules with clusterProfiler enrichKEGG/enrichMKEGG (ORA), gseKEGG (GSEA), and SPIA/graphite (signed-topology… | GPTomics/ | 1.2k | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Query the NCI CCDI Molecular Targets Platform (pediatric oncology) for targets (genes), diseases, drugs, and target-disease associations via its public GraphQL API. | QSong-github/ | 116 | 1 repo | ~744 | Automated safety check: Pass | No licence | 1 mo ago |
| 4 | Query gene, sequence, and variant data via the Ensembl REST API | wentorai/ | 298 | 1 repo | ~2k | Automated safety check: Pass | MIT | 3 mo ago |
| 5 | Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
