Python agent skills, page 74

Maps between gene identifier systems (Ensembl, Entrez, HGNC symbol, UniProt, RefSeq, MANE) using AnnotationDbi, biomaRt, mygene, pyensembl, and Ensembl REST.

GPTomics/bioSkills

Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <- CSR (Python) implicit…

GPTomics/bioSkills

Nominates and assesses CRISPR off-target sites genome-wide. An agent skill from GPTomics/bioSkills.

GPTomics/bioSkills

Compares Hi-C contact maps between conditions across the right scale -- differential bin-pair contacts (multiHiCcompare, diffHic), differential A/B compartments (dcHiC), differential TAD boundaries…

GPTomics/bioSkills

Infers and describes population structure with PCA (plink2 --pca, smartpca/EIGENSOFT, FlashPCA2), model-based clustering (ADMIXTURE, fastSTRUCTURE), FST estimators (Weir-Cockerham vs Hudson), and…

GPTomics/bioSkills

Tests for differentially abundant proteins between conditions with limma/DEqMS empirical-Bayes moderation, proDA/msqrob2/MSstats missingness modeling, and Python Welch+BH alternatives.

GPTomics/bioSkills

Predicts RNA secondary structure with ViennaRNA, treating the Boltzmann ensemble (partition function, base-pair probabilities, centroid, MEA, stochastic samples) as the object rather than a single…

GPTomics/bioSkills

Clusters temporally variable genes by expression-profile SHAPE (not significance) using Mfuzz fuzzy c-means, TCseq, DEGreport degPatterns, and tslearn DTW/soft-DTW.

GPTomics/bioSkills

End-to-end bulk time-course analysis from an expression matrix to temporal gene modules and per-cluster pathway enrichment.

GPTomics/bioSkills

A skill your agent uses when writing, fixing, editing, reviewing, or refactoring any Python code.

ertugrul-dmr/clean-code-skills

Access Our World in Data from Python with the owid-catalog library: load chart data, catalog tables or individual indicators as pandas DataFrames that carry their own units, descriptions, sources…

owid/etl

Query the grapher MySQL database (local dev, a branch's staging server, or production via the public Datasette) and verify indicators and charts on a staging server.

owid/etl

Sync upstream grapher schema changes (new chart types, config fields, enum values) into the ETL repo — vendored schema, multidim-schema, dataset-schema, and regenerated Python types.

owid/etl

9 パッケージ × 5 レジストリの version bump と関連ファイル更新 (Cargo.lock / package-lock.json / Swift checksum / CHANGELOG 昇格) を 1 コマンドで適用案にする read-mostly skill。release-prep (確認用) の続きに呼び、 実 bump 差分の markdown 提案 + 順序付き…

ayutaz/piper-plus

piper-plus の各言語ランタイムのテストを実行します。引数 python/rust/cs/go/js/cpp/all で対象を選択。未指定なら git diff から自動判定。

ayutaz/piper-plus

コミット前にエージェントチームで全ドキュメント (CLAUDE.md / README / CHANGELOG / docs/) を監査し、コード変更に応じて自動更新します。大規模変更時の documentation drift を予防。

ayutaz/piper-plus

Generate a Reveal.js HTML presentation from Markdown. An agent skill from flonat/flonat-research.

flonat/flonat-research

Build AI agents with Pydantic AI (Python) and Claude SDK (Node.js)

alinaqi/maggy

Diagnose failed Quark installation, PTQ execution, script generation, or export attempts.

amd/Quark

Install or verify the correct PyTorch build for a user's accelerator backend before Quark installation.

amd/Quark

Cell 系列科研工作总入口。根据用户的科研任务，在科研选题、研究计划、顶刊综述、英文论文深度润色、审稿回复、投稿整理、Python/MATLAB 科研可视化代码、数据图复现、科研图重建、文字或图片生成可编辑科研图和 PowerPoint 原生对象编辑成员之间选择一个最匹配的 Skill，并直接执行对应流程。用户说“Cell 系列”“用 Cell 做”但未指定成员，或需要判断应使用哪个…

yrui-cmd/Cell

Operational guide for implementing a new Envilder runtime SDK.

macalbert/envilder

Checklist for adding a new SDK or releasing a new SDK version.

macalbert/envilder

Inventory, assess, update, and validate third-party dependencies across Bun, Python/uv, Cargo, Docker, and GitHub Actions without hiding ecosystem or supply-chain risk.

stella/stella

A skill your agent uses when aer-identification has fixed the design, after methodology choice and before aer-robustness or aer-tables-figures, to run an AER-track analysis with StatsPAI — the…

brycewang-stanford/Auto-Empirical-Research-Skills

Validate the replication package for the sewage-house-prices project.

brycewang-stanford/Auto-Empirical-Research-Skills

End-to-end data analysis workflow in R or Python — from exploration through regression to publication-ready tables and figures.

brycewang-stanford/Auto-Empirical-Research-Skills

Prepare a replication package for the sewage-house-prices project.

brycewang-stanford/Auto-Empirical-Research-Skills

Manual for the marginaleffects R and Python package, and guide to the book "Model to Meaning".

brycewang-stanford/Auto-Empirical-Research-Skills

Run the instrumented specification search in the user's own statistical language — Stata (reghdfe, ivreghdfe, rdrobust, did2s), R (fixest, rdrobust, did2s), Python (statsmodels, linearmodels) or…

brycewang-stanford/Auto-Empirical-Research-Skills

Dense, machine-readable API reference for PyFixest — high-dimensional fixed-effects OLS/WLS/IV and Poisson (feols, fepois, feglm), clustered/robust standard errors, R-style formula syntax, and…

brycewang-stanford/Auto-Empirical-Research-Skills

R-to-Python translation for data analysis. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills.

brycewang-stanford/Auto-Empirical-Research-Skills

Run a full 6-phase autonomous replication of a biomedical/epidemiology paper against UK Biobank or similar cohort data, producing Python and R scripts plus a validated replication report.

brycewang-stanford/Auto-Empirical-Research-Skills

Stata-to-Python translation for data analysis. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills.

brycewang-stanford/Auto-Empirical-Research-Skills

Econometrics skill for creating publication-quality LaTeX regression and summary tables.

brycewang-stanford/Auto-Empirical-Research-Skills

Software development knowledge reference covering Python, Go, Rust, TypeScript, Java, C++, and Shell.

telagod/code-abyss

Show DMP status for the active brand: profile, engagement progress, recent insights.

indranilbanerjee/digital-marketing-pro

全能 AI 编程导师，通过互动课程、代码审查、苏格拉底式调试引导、算法练习、项目指导等方式系统化教授编程，支持 Python 和 JavaScript。当用户想学习编程语言、调试代码、理解算法与数据结构、审查代码质量、学习设计模式、准备编程面试、了解工程最佳实践，或从零构建项目、辅导编程作业时触发。

rongxinzy/RongxinAI

显示 python-office 库的使用教程、群组信息、源码地址等。当用户提到 python-office 介绍、查看课程、帮助信息、资源链接时使用。

CoderWanFeng/python-office

Model cap table dilution, SAFE conversion, and exit waterfall across scenarios.

davepoon/buildwithclaude

Scan a company or sector for deal-sourcing signals across 6 dimensions.

davepoon/buildwithclaude

Run deterministic financial models for startup valuation and SaaS health analysis.

davepoon/buildwithclaude

Compute fund KPIs (TVPI, DPI, IRR, MOIC), model carried interest and management fees, and generate LP quarterly update narratives.

davepoon/buildwithclaude

Run TAM/SAM/SOM market sizing with top-down and bottom-up methods, competitive landscape, and tech stack analysis.

davepoon/buildwithclaude

Activate for ANY startup evaluation, investment screening, or company assessment.

davepoon/buildwithclaude

Load BEFORE translating Python source to Lean 4. An agent skill from sunblaze-ucb/vero.

sunblaze-ucb/vero

Test-driven development workflow with test generation, coverage analysis, and multi-framework support

aAAaqwq/AGI-Super-Team

Generates an interactive Docker Python lab block for MkDocs textbook pages, where students write and run real Python code inside an isolated Docker container.

dmccreary/ibook-skills