GitHub organization
Agent skills by bactopia
- skills
- 15
- repository
- 1
Repositories by bactopia
Skills by bactopia, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Scaffold a complete Bactopia Tool across all three tiers -- module, subworkflow, and workflow entry point under workflows/bactopia-tools/. | bactopia/ | 522 | — | ~4.1k | Automated safety check: Pass | MIT | 2 mo ago |
| 2 | Propagate the Bactopia and nf-bactopia versions declared in versions.yml into the hand-maintained files that carry a literal version (conf/testbase.config, CITATION.cff, bin/bactopia… | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 3 | Regenerate nextflow.config and nextflowschema.json for Bactopia workflows by running bactopia-merge-schemas. | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 4 | Show a live snapshot of the Bactopia project state — component counts, GroovyDoc coverage, nf-test coverage, and structural issues. | bactopia/ | 522 | — | ~787 | Automated safety check: Pass | MIT | 2 mo ago |
| 5 | Audit whether Bactopia is ready for a version release and produce a GO / NO-GO recommendation report. | bactopia/ | 522 | — | ~4.9k | Automated safety check: Pass | MIT | 2 mo ago |
| 6 | Review citation integrity across data/citations.yml and @citation tags using bactopia-citations --validate. | bactopia/ | 522 | — | ~2.5k | Automated safety check: Pass | MIT | 2 mo ago |
| 7 | Review staleness of reference docs under .agents/docs/ using bactopia-docs --validate. | bactopia/ | 522 | — | ~3.4k | Automated safety check: Pass | MIT | 2 mo ago |
| 8 | Review GroovyDoc accuracy across modules and subworkflows using bactopia-lint. | bactopia/ | 522 | — | ~1.8k | Automated safety check: Pass | MIT | 2 mo ago |
| 9 | Review nf-test run results and present a diagnostic summary with grouped error analysis. | bactopia/ | 522 | — | ~3.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 10 | Regenerate catalog.json and llms.txt by running bactopia-catalog. | bactopia/ | 522 | — | ~1.4k | Automated safety check: Pass | MIT | 2 mo ago |
| 11 | Build and publish Bactopia's version-pinned datasets to Cloudflare R2. | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 12 | Check for newer versions of tools used in Bactopia modules and apply updates to module.config files and CHANGELOG.md. | bactopia/ | 522 | — | ~1.3k | Automated safety check: Pass | MIT | 2 mo ago |
| 13 | 13.Run Tests Run Bactopia nf-tests via bactopia-test and produce a timestamped logs/ directory that /review-tests can interpret. | bactopia/ | 522 | — | ~4.8k | Automated safety check: Warn | MIT | 2 mo ago |
| 14 | 14.Add Module Scaffold a new Bactopia module from a bioconda/conda-forge package. | bactopia/ | 522 | — | ~3.1k | Automated safety check: Pass | MIT | 2 mo ago |
| 15 | Scaffold a new Bactopia subworkflow that orchestrates existing modules. | bactopia/ | 522 | — | ~2.6k | Automated safety check: Pass | MIT | 2 mo ago |
Questions, answered from the data.
What is the best skill by bactopia?
Add Bactopia Tool from bactopia/bactopia ranks first of the 15 skills by bactopia listed here, with the highest score: its repository has 522 GitHub stars, its SKILL.md loads about 4.1k tokens and it passes the automated safety check with no findings. Next come Bump Versions and Merge Schemas.
Are bactopia's skills official?
None yet. All 15 skills by bactopia listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.